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  5. Msp_g14666

Msp_g14666 (CAF2, ATCAF2)


Aliases : CAF2, ATCAF2

Description : component *(CAF) of CRS2-CAF plastidial RNA splicing factor complexes & original description: none


Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g14666
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00145630 evm_27.TU.AmTr_v1... CRS2-associated factor 2, mitochondrial OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
AT2G20020 ATCAF1, CAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.02 OrthoFinder output from all 47 species
AT4G31010 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g054906 ATCAF1, CAF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g34328 ATCAF1, CAF1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08998 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Cba_g06914 CAF2, ATCAF2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g10639 ATCAF1, CAF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14796 ATCAF1, CAF1 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Dde_g16819 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
GSVIVT01015331001 ATCAF1, CAF1 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
GSVIVT01027582001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Lfl_g11178 ATCAF1, CAF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13842 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species
Solyc11g066300.3.1 CAF2, ATCAF2,... component CAF of CRS2-CAF plastidial RNA splicing factor... 0.03 OrthoFinder output from all 47 species
Spa_g10709 ATCAF1, CAF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 799 882
IPR001890 RNA-binding_CRM 681 764
No external refs found!