Msp_g14663

Description : component *(NOT4) of mRNA deadenylation CCR4-NOT complex & original description: none

Gene families : OG0003273 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003273_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g14663
Cluster	HCCA: Cluster_164

Target	Alias	Description	ECC score	Gene Family Method
AT5G60170	No alias	RNA binding (RRM/RBD/RNP motifs) family protein	0.02	OrthoFinder output from all 47 species
Aev_g34034	No alias	component *(NOT4) of mRNA deadenylation CCR4-NOT complex...	0.04	OrthoFinder output from all 47 species
Als_g29069	No alias	component *(NOT4) of mRNA deadenylation CCR4-NOT complex...	0.05	OrthoFinder output from all 47 species
Aop_g13675	No alias	component *(NOT4) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Azfi_s0253.g060398	No alias	component *(NOT4) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
LOC_Os12g01190.2	LOC_Os12g01190	component NOT4 of mRNA deadenylation CCR4-NOT complex	0.03	OrthoFinder output from all 47 species
MA_26070g0010	No alias	component NOT4 of mRNA deadenylation CCR4-NOT complex	0.05	OrthoFinder output from all 47 species
Pnu_g23488	No alias	component *(NOT4) of mRNA deadenylation CCR4-NOT complex...	0.04	OrthoFinder output from all 47 species
Smo76400	No alias	RNA processing.RNA decay.deadenylation-dependent...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003689	DNA clamp loader activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
CC	GO:0005663	DNA replication factor C complex	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	131	191

External Links

No external refs found!