Msp_g14398

Description : RNA helicase *(Brr2) & original description: none

Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g14398

Target	Alias	Description	ECC score	Gene Family Method
AT1G20960	emb1507	U5 small nuclear ribonucleoprotein helicase, putative	0.02	OrthoFinder output from all 47 species
Adi_g085426	No alias	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g117139	emb1507	RNA helicase *(Brr2) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g01989	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene09499.t1	emb1507, Aspi01Gene09499	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000865.27	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.01	OrthoFinder output from all 47 species
Dcu_g19260	emb1507	RNA helicase *(Brr2) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g04070	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g12876	emb1507	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os02g01740.1	emb1507, LOC_Os02g01740	RNA helicase (Brr2)	0.02	OrthoFinder output from all 47 species
Len_g21125	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
MA_81219g0020	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.03	OrthoFinder output from all 47 species
Sam_g18045	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g36113	No alias	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	466	640
IPR001650	Helicase_C	695	841
IPR001650	Helicase_C	1587	1677
IPR004179	Sec63-dom	1796	2112
IPR004179	Sec63-dom	965	1269
IPR011545	DEAD/DEAH_box_helicase_dom	1314	1479

External Links

No external refs found!

Msp_g14398

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation