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Msp_g13581


Description : nucleocytoplasmic transport karyopherin *(XPO4) & original description: none


Gene families : OG0004951 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004951_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g13581
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00074620 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Aev_g07994 No alias nucleocytoplasmic transport karyopherin *(XPO4) &... 0.02 OrthoFinder output from all 47 species
Als_g12362 No alias nucleocytoplasmic transport karyopherin *(XPO4) &... 0.02 OrthoFinder output from all 47 species
Azfi_s0262.g060803 No alias nucleocytoplasmic transport karyopherin *(XPO4) &... 0.03 OrthoFinder output from all 47 species
LOC_Os10g33710.1 LOC_Os10g33710 XPO4 nucleocytoplasmic transport karyopherin 0.02 OrthoFinder output from all 47 species
Lfl_g36174 No alias nucleocytoplasmic transport karyopherin *(XPO4) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005049 nuclear export signal receptor activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR014877 XPO1_C_dom 956 1038
No external refs found!