Msp_g13478


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g13478

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00175270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g31790... 0.03 OrthoFinder output from all 47 species
AT5G48910 LPA66 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g100866 REME1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g38989 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g58106 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene05366.t1 VAC1, ECB2,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene22090.t1 Aspi01Gene22090 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07175 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.07G078100.1 OTP84, Ceric.07G078100 not classified & original description: pacid=50626860... 0.05 OrthoFinder output from all 47 species
Ceric.17G073400.1 OTP86, Ceric.17G073400 not classified & original description: pacid=50617570... 0.05 OrthoFinder output from all 47 species
Ceric.28G065700.1 CRR22, Ceric.28G065700 not classified & original description: pacid=50569957... 0.05 OrthoFinder output from all 47 species
Dac_g16347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22189 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g22336 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07693 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g17044 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17291 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43235 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g43258 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g43298 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g19384 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23619 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os10g39460.2 LOC_Os10g39460 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Lfl_g04163 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07787 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_141034g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_20746g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_452577g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_597g0020 DOT4 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Nbi_g08329 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g16471 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g24808 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g06449 No alias ssDNA-binding protein *(OSB) & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g10372 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g22406 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g22914 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26958 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43620 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g12185 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g50959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g58725 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g63635 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63901 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g03722 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g22120 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g05784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo181046 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Spa_g07054 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g08093 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23698 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e016281_P001 LPA66, Zm00001e016281 Pentatricopeptide repeat-containing protein At3g62890... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 613 660
IPR002885 Pentatricopeptide_repeat 107 154
IPR002885 Pentatricopeptide_repeat 411 458
IPR002885 Pentatricopeptide_repeat 514 560
IPR002885 Pentatricopeptide_repeat 310 357
IPR002885 Pentatricopeptide_repeat 211 240
IPR002885 Pentatricopeptide_repeat 183 210
IPR002885 Pentatricopeptide_repeat 689 706
IPR002885 Pentatricopeptide_repeat 11 39
IPR002885 Pentatricopeptide_repeat 487 512
IPR002885 Pentatricopeptide_repeat 753 779
IPR002885 Pentatricopeptide_repeat 588 608
No external refs found!