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  5. Msp_g13402

Msp_g13402 (SPT)


Aliases : SPT

Description : bHLH-type transcription factor & original description: none


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g13402

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00032460 PIL5, PIF1,... External stimuli response.light.red/far red light.PIF... 0.02 OrthoFinder output from all 47 species
AMTR_s00133p00027110 BPEp, ZCW32,... External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
Als_g49316 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12124 SPT bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01011109001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
LOC_Os03g58330.1 UNE12, LOC_Os03g58330 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os03g58830.1 LOC_Os03g58830 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
LOC_Os06g41060.1 LOC_Os06g41060 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os09g31300.1 LOC_Os09g31300 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Lfl_g06200 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g24682 LRL3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g30793 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43162 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013028 No alias bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Zm00001e016160_P003 SPT, Zm00001e016160 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 471 518
No external refs found!