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  5. Msp_g13366

Msp_g13366


Description : not classified & original description: none


Gene families : OG0006545 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006545_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g13366

Target Alias Description ECC score Gene Family Method Actions
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Ceric.27G000500.1 Ceric.27G000500 not classified & original description: pacid=50606226... 0.03 OrthoFinder output from all 47 species
Dcu_g09918 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15290 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004055 No alias not classified & original description: CDS=1-1875 0.03 OrthoFinder output from all 47 species
Smo77736 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 277 321
IPR002885 Pentatricopeptide_repeat 801 844
IPR002885 Pentatricopeptide_repeat 167 208
IPR033443 PPR_long 468 582
IPR002885 Pentatricopeptide_repeat 631 657
IPR002885 Pentatricopeptide_repeat 699 728
IPR002885 Pentatricopeptide_repeat 594 618
IPR002885 Pentatricopeptide_repeat 424 441
IPR002885 Pentatricopeptide_repeat 246 275
IPR002885 Pentatricopeptide_repeat 350 380
No external refs found!