Msp_g13272


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g13272

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00010p00262470 OTP85 Pentatricopeptide repeat-containing protein At2g02980,... 0.02 OrthoFinder output from all 47 species
AMTR_s00025p00244370 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g05340... 0.04 OrthoFinder output from all 47 species
AMTR_s00032p00219990 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.02 OrthoFinder output from all 47 species
AMTR_s00068p00031610 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Adi_g018291 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g058970 RARE1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g067253 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g111267 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g20571 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g29330 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g33897 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Aev_g42294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24418 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g28133 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g37976 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Als_g06803 OTP86 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g17957 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g18375 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30790 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g17095 OTP84 not classified & original description: none 0.11 OrthoFinder output from all 47 species
Aob_g19927 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27295 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g28639 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g40241 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g39230 OTP84 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene35082.t1 Aspi01Gene35082 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06200 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07249 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g11909 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g20840 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g22830 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g26543 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g26795 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g29836 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g29871 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g35061 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g35519 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g59978 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75269 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75325 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g43291 OTP86 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g45797 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g47891 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g13294 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Gb_37976 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os03g62400.1 LOC_Os03g62400 Pentatricopeptide repeat-containing protein At3g13880... 0.02 OrthoFinder output from all 47 species
Len_g16226 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18417 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g26486 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g56529 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g15863 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g47208 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g12719 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Nbi_g40116 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g22808 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34171 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64875 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pnu_g28658 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g06693 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g18809 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g53186 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g57818 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12540 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g16744 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g09809 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14002 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g20297 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g21107 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23700 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26050 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26143 MEF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27801 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30057 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g40518 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45048 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53491 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54207 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55590 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g57370 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44215 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g46024 CRR22 not classified & original description: none 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 335 355
IPR002885 Pentatricopeptide_repeat 125 150
IPR002885 Pentatricopeptide_repeat 261 307
IPR002885 Pentatricopeptide_repeat 22 70
IPR002885 Pentatricopeptide_repeat 160 206
No external refs found!