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  5. Msp_g12876

Msp_g12876


Description : not classified & original description: none


Gene families : OG0011543 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011543_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g12876

Target Alias Description ECC score Gene Family Method Actions
Als_g14585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G066900.1 Ceric.14G066900 not classified & original description: pacid=50633332... 0.05 OrthoFinder output from all 47 species
Spa_g10324 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 130 178
IPR002885 Pentatricopeptide_repeat 528 575
IPR002885 Pentatricopeptide_repeat 830 878
IPR002885 Pentatricopeptide_repeat 1131 1179
IPR002885 Pentatricopeptide_repeat 629 675
IPR002885 Pentatricopeptide_repeat 932 978
IPR002885 Pentatricopeptide_repeat 228 275
IPR002885 Pentatricopeptide_repeat 326 372
IPR002885 Pentatricopeptide_repeat 1035 1060
IPR002885 Pentatricopeptide_repeat 1006 1032
IPR002885 Pentatricopeptide_repeat 431 459
IPR002885 Pentatricopeptide_repeat 733 762
IPR002885 Pentatricopeptide_repeat 1106 1129
IPR002885 Pentatricopeptide_repeat 202 225
IPR002885 Pentatricopeptide_repeat 704 727
IPR002885 Pentatricopeptide_repeat 1235 1264
No external refs found!