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  5. Msp_g12625

Msp_g12625 (PGY1)


Aliases : PGY1

Description : component *(uL1) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g12625

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00167280 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AT1G08360 No alias Ribosomal protein L1p/L10e family 0.04 OrthoFinder output from all 47 species
AT2G27530 PGY1 Ribosomal protein L1p/L10e family 0.07 OrthoFinder output from all 47 species
AT5G22440 No alias Ribosomal protein L1p/L10e family 0.03 OrthoFinder output from all 47 species
Adi_g012505 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0022.g016098 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.18G006900.1 Ceric.18G006900 component *(uL1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.34G055700.1 Ceric.34G055700 component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cre02.g101350 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Dcu_g51102 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01036128001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Gb_28506 No alias component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_12000g0010 No alias component RPL10a of LSU proteome component 0.02 OrthoFinder output from all 47 species
MA_71921g0010 No alias component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Mp3g07870.1 No alias component RPL10a of LSU proteome component 0.04 OrthoFinder output from all 47 species
Pir_g04954 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g34689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g009520.4.1 Solyc01g009520 component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc06g074300.4.1 Solyc06g074300 component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc11g068420.2.1 Solyc11g068420 component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Spa_g08347 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g08353 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e022063_P001 Zm00001e022063 component RPL10a of LSU proteome component 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 21 210
No external refs found!