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  5. Msp_g11006

Msp_g11006 (ABCG40, PDR12,...)


Aliases : ABCG40, PDR12, ATABCG40, ATPDR12

Description : not classified & original description: none


Gene families : OG0000071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g11006

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00097650 ABCG40, PDR12,... Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
GSVIVT01016993001 ATPDR7, PDR7 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
GSVIVT01016998001 PDR1, ATPDR1 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
GSVIVT01017202001 ABCG40, PDR12,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
GSVIVT01031314001 PIS1, ABCG37,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
GSVIVT01034745001 PDR6, ATPDR6 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
GSVIVT01035715001 PDR4, ATPDR4 Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
LOC_Os09g16449.1 ABCG40, PDR12,... subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
MA_12965g0010 ABCG40, PDR12,... subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Mp2g07030.1 PDR6, ATPDR6 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Pnu_g20429 PDR11, ATPDR11 subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g091660.3.1 ABCG40, PDR12,... subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Zm00001e039353_P001 PIS1, ABCG37,... subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 1 122
No external refs found!