Msp_g10426

Description : RNA helicase Prp43 of Intron-Lariat Spliceosome complex & original description: none

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g10426

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00005p00122910	evm_27.TU.AmTr_v1...	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	OrthoFinder output from all 47 species
Ala_g38553	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g64809	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cre07.g349100	ESP3, EMB2733	RNA processing.RNA splicing.spliceosome...	0.01	OrthoFinder output from all 47 species
Ehy_g25246	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_10428112g0030	FAS4, ATFAS4	ATP-dependent RNA helicase DEAH13 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp3g17320.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder output from all 47 species
Pir_g07808	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.03	OrthoFinder output from all 47 species
Zm00001e001487_P003	Zm00001e001487	helicase Prp43 of Intron-Lariat Spliceosome complex	0.03	OrthoFinder output from all 47 species
Zm00001e014112_P001	Zm00001e014112	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011709	DEAD-box_helicase_OB_fold	610	686
IPR001650	Helicase_C	266	397
IPR007502	Helicase-assoc_dom	460	548
IPR011545	DEAD/DEAH_box_helicase_dom	68	219

External Links

No external refs found!