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  5. Msp_g09871

Msp_g09871


Description : associated component *(AFR) of histone deacetylase machineries & original description: none


Gene families : OG0001072 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001072_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g09871

Target Alias Description ECC score Gene Family Method Actions
Adi_g042773 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Aev_g06518 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Aob_g17167 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Azfi_s0084.g038914 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Azfi_s0305.g063893 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Cba_g50138 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Ceric.07G066600.1 Ceric.07G066600 associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Ceric.18G085500.1 Ceric.18G085500 associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Ceric.28G016000.1 Ceric.28G016000 associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Ehy_g02275 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Ehy_g09035 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
GSVIVT01019028001 No alias Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
LOC_Os02g57740.1 LOC_Os02g57740 associated component SAP30 of histone deacetylase machineries 0.01 OrthoFinder output from all 47 species
LOC_Os04g08450.3 LOC_Os04g08450 associated component SAP30 of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
Len_g16678 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Lfl_g18360 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Nbi_g00911 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Pir_g00552 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Pir_g00912 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Sam_g20047 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Solyc08g081310.4.1 Solyc08g081310 associated component SAP30 of histone deacetylase machineries 0.01 OrthoFinder output from all 47 species
Tin_g10450 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Zm00001e027006_P001 Zm00001e027006 associated component SAP30 of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR025718 SAP30_Sin3-bd 169 221
No external refs found!