Smo61985 (PACid_15420136)


Aliases : PACid_15420136

Description : 27.1 RNA.processing It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis. high chlorophyll fluorescent 107 (HCF107) FUNCTIONS IN: binding INVOLVED IN: plastid organization, RNA processing, regulation of translation LOCATED IN: chloroplast envelope EXPRESSED IN: 21 plant structures EXPRESSED DURING: 13 growth stages CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734) BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor-related (TAIR:AT4G03430.1). & (q9fns4|mbb1_chlre : 210.0


Gene families : OG_01_0006115 (Gene family) Phylogenetic Tree(s): OG0006115_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo61985
Cluster HCCA cluster: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
Cre09.g416200 No alias 27.1 RNA.processing It is a RNA tetratricopeptide... 0.02 Gene family
LOC_Os03g19560 Os03g0308800 27.1 RNA.processing It is a RNA tetratricopeptide... 0.02 Gene family
Solyc04g009020.3.1 Solyc04g009020.3 27.1 RNA.processing It is a RNA tetratricopeptide... 0.02 Gene family
Zm00001d028901 GRMZM2G121960 27.1 RNA.processing It is a RNA tetratricopeptide... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR019734 TPR_repeat 144 174
No external refs found!