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  5. Msp_g09193

Msp_g09193


Description : BBX class-V transcription factor & original description: none


Gene families : OG0001765 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001765_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g09193

Target Alias Description ECC score Gene Family Method Actions
AT4G27310 No alias B-box type zinc finger family protein 0.07 OrthoFinder output from all 47 species
AT5G54470 No alias B-box type zinc finger family protein 0.04 OrthoFinder output from all 47 species
Cba_g36544 No alias BBX class-V transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g22770.1 LOC_Os03g22770 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
MA_6794201g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g39680 No alias BBX class-V transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g053140.3.1 Solyc07g053140 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Spa_g11628 No alias BBX class-V transcription factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0022603 regulation of anatomical structure morphogenesis IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0045765 regulation of angiogenesis IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901342 regulation of vasculature development IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 10 49
No external refs found!