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  5. Msp_g09059

Msp_g09059


Description : RNA editing factor *(OZ) & original description: none


Gene families : OG0001673 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001673_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g09059

Target Alias Description ECC score Gene Family Method Actions
Adi_g003867 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g111342 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g19541 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19944 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0661.g081440 No alias RNA editing factor *(OZ) & original description: CDS=90-3326 0.03 OrthoFinder output from all 47 species
Cba_g14180 No alias RNA editing factor *(OZ) & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g25497 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01008444001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_13912 No alias RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
LOC_Os01g10630.1 LOC_Os01g10630 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os07g22024.1 LOC_Os07g22024 RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species
MA_7499122g0010 No alias RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species
Ore_g03681 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55843 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g06378 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07101 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g007440.3.1 Solyc10g007440 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 517 544
IPR001876 Znf_RanBP2 599 626
IPR001876 Znf_RanBP2 481 509
IPR001876 Znf_RanBP2 559 585
No external refs found!