Smo6091 (PACid_15418738)


Aliases : PACid_15418738

Description : 27.3.25 RNA.regulation of transcription.MYB domain transcription factor family Encodes LOF2 (LATERAL ORGAN FUSION2), a MYB-domain transcription factor expressed in organ boundaries. Functions in boundary specification, meristem initiation and maintenance, and organ patterning. Also see LOF1 (At1g26780). myb domain protein 105 (MYB105) CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495) BEST Arabidopsis thaliana protein match is: myb domain protein 117 (TAIR:AT1G26780.2) Has 8910 Blast hits to 7943 proteins in 558 species: Archae - 0 Bacteria - 0 Metazoa - 941 Fungi - 606 Plants - 5396 Viruses - 6 Other Eukaryotes - 1961 (source: NCBI BLink). & (chl4|519747 : 126.0


Gene families : OG_01_0000044 (Gene family) Phylogenetic Tree(s): OG0000044_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo6091
Cluster HCCA cluster: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AT1G73410 MYB54, ATMYB54 myb domain protein 54 0.02 Gene family
AT3G27785 PGA37, ATMYB118, MYB118 myb domain protein 118 0.03 Gene family
AT4G33450 ATMYB69, MYB69 myb domain protein 69 0.02 Gene family
Cpa|evm.model.tig00000663.2 No alias 27.3.25 RNA.regulation of transcription.MYB domain... 0.01 Gene family
GSVIVT01007731001 No alias 27.3.25 RNA.regulation of transcription.MYB domain... 0.02 Gene family
GSVIVT01008484001 No alias 27.3.25 RNA.regulation of transcription.MYB domain... 0.03 Gene family
GSVIVT01024774001 No alias 27.3.25 RNA.regulation of transcription.MYB domain... 0.03 Gene family
MA_10425867g0020 No alias 27.3.25 RNA.regulation of transcription.MYB domain... 0.01 Gene family
Solyc03g112890.1.1 Solyc03g112890.1 27.3.25 RNA.regulation of transcription.MYB domain... 0.02 Gene family
Solyc05g007870.2.1 Solyc05g007870.2 27.3.25 RNA.regulation of transcription.MYB domain... 0.03 Gene family
Zm00001d004681 GRMZM2G147152 27.3.25 RNA.regulation of transcription.MYB domain... 0.02 Gene family
Zm00001d033815 GRMZM2G077147 27.3.25 RNA.regulation of transcription.MYB domain... 0.02 Gene family
Zm00001d041818 GRMZM5G803355 27.3.25 RNA.regulation of transcription.MYB domain... 0.02 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001005 SANT/Myb 55 98
No external refs found!