Msp_g08961

Description : component *(uS3) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001769_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Msp_g08961

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00219330	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AMTR_s00030p00157370	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
AT5G35530	No alias	Ribosomal protein S3 family protein	0.06	OrthoFinder output from all 47 species
Als_g11830	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g11605	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cba_g18995	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021462.41	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Cre02.g102250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Dac_g08554	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dac_g21379	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g13853	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01015110001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Gb_13623	No alias	component RPS3 of SSU proteome	0.03	OrthoFinder output from all 47 species
Gb_26536	No alias	component RPS3 of SSU proteome	0.05	OrthoFinder output from all 47 species
LOC_Os03g38000.1	LOC_Os03g38000	component RPS3 of SSU proteome	0.05	OrthoFinder output from all 47 species
LOC_Os07g41750.1	LOC_Os07g41750	component RPS3 of SSU proteome	0.04	OrthoFinder output from all 47 species
Mp1g16730.1	No alias	component RPS3 of SSU proteome	0.07	OrthoFinder output from all 47 species
Nbi_g02786	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g11610	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c11_22640V3.1	Pp3c11_22640	Ribosomal protein S3 family protein	0.03	OrthoFinder output from all 47 species
Pp3c15_21360V3.1	Pp3c15_21360	Ribosomal protein S3 family protein	0.01	OrthoFinder output from all 47 species
Pp3c16_3760V3.1	Pp3c16_3760	Ribosomal protein S3 family protein	0.01	OrthoFinder output from all 47 species
Pp3c5_5330V3.1	Pp3c5_5330	Ribosomal protein S3 family protein	0.01	OrthoFinder output from all 47 species
Pp3c7_2620V3.1	Pp3c7_2620	Ribosomal protein S3 family protein	0.02	OrthoFinder output from all 47 species
Pp3c9_12170V3.1	Pp3c9_12170	Ribosomal protein S3 family protein	0.02	OrthoFinder output from all 47 species
Sam_g27040	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sam_g27041	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Smo270414	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Smo270666	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Solyc07g041310.3.1	Solyc07g041310	component RPS3 of SSU proteome	0.04	OrthoFinder output from all 47 species
Solyc08g061843.1.1	Solyc08g061843	component RPS3 of SSU proteome	0.06	OrthoFinder output from all 47 species
Spa_g51511	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g04971	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Tin_g05397	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e021687_P001	Zm00001e021687	component RPS3 of SSU proteome	0.03	OrthoFinder output from all 47 species
Zm00001e035528_P001	Zm00001e035528	component RPS3 of SSU proteome	0.03	OrthoFinder output from all 47 species
Zm00001e040177_P002	Zm00001e040177	component RPS3 of SSU proteome	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004044	KH_dom_type_2	21	94
IPR001351	Ribosomal_S3_C	107	189

External Links

No external refs found!

Msp_g08961

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation