1. Home
  2. Species
  3. Microlepia speluncae
  4. Sequence
  5. Msp_g08820

Msp_g08820


Description : not classified & original description: none


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g08820

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00205450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g25210,... 0.02 OrthoFinder output from all 47 species
AMTR_s00019p00238660 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g20300,... 0.03 OrthoFinder output from all 47 species
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.04 OrthoFinder output from all 47 species
AMTR_s00044p00153760 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00078p00045650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52640,... 0.02 OrthoFinder output from all 47 species
AMTR_s00105p00044870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71060,... 0.04 OrthoFinder output from all 47 species
AMTR_s00119p00029960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g15010,... 0.05 OrthoFinder output from all 47 species
AMTR_s00119p00084460 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27800,... 0.02 OrthoFinder output from all 47 species
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.04 OrthoFinder output from all 47 species
AMTR_s00142p00073110 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73400,... 0.03 OrthoFinder output from all 47 species
AT1G02420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G20300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G71060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G73400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G74900 OTP43 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G80880 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G16010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.07 OrthoFinder output from all 47 species
AT3G22670 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G14820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G65820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g058761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066581 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g03187 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g08644 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g17218 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54972 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g04415 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g15608 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aob_g17604 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g10252 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g16187 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g23699 No alias group-II intron mitochondrial splicing factor *(MISF68)... 0.05 OrthoFinder output from all 47 species
Cba_g78360 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.09G082800.1 Ceric.09G082800 not classified & original description: pacid=50587508... 0.03 OrthoFinder output from all 47 species
Ceric.24G045100.1 Ceric.24G045100 not classified & original description: pacid=50628969... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000737.24 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020723.110 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Dcu_g04707 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g05532 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g09971 No alias group-II intron mitochondrial splicing factor *(MISF68)... 0.05 OrthoFinder output from all 47 species
Dcu_g39023 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g13495 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01002056001 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.05 OrthoFinder output from all 47 species
GSVIVT01007280001 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.17 OrthoFinder output from all 47 species
GSVIVT01014289001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.11 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.11 OrthoFinder output from all 47 species
GSVIVT01017293001 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.09 OrthoFinder output from all 47 species
GSVIVT01026360001 No alias Pentatricopeptide repeat-containing protein At5g18390,... 0.06 OrthoFinder output from all 47 species
GSVIVT01026463001 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.05 OrthoFinder output from all 47 species
GSVIVT01027384001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.02 OrthoFinder output from all 47 species
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.17 OrthoFinder output from all 47 species
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.05 OrthoFinder output from all 47 species
Gb_23459 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.06 OrthoFinder output from all 47 species
LOC_Os01g05860.1 LOC_Os01g05860 Putative pentatricopeptide repeat-containing protein... 0.09 OrthoFinder output from all 47 species
LOC_Os01g60010.1 LOC_Os01g60010 Pentatricopeptide repeat-containing protein At5g15010,... 0.05 OrthoFinder output from all 47 species
LOC_Os02g38950.1 LOC_Os02g38950 Pentatricopeptide repeat-containing protein At3g04130,... 0.03 OrthoFinder output from all 47 species
LOC_Os02g52220.1 LOC_Os02g52220 Pentatricopeptide repeat-containing protein At1g73400,... 0.07 OrthoFinder output from all 47 species
LOC_Os03g11020.1 LOC_Os03g11020 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
LOC_Os04g55090.1 LOC_Os04g55090 Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
Len_g12106 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g14239 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
MA_10433557g0010 No alias Pentatricopeptide repeat-containing protein At2g27800,... 0.03 OrthoFinder output from all 47 species
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.07 OrthoFinder output from all 47 species
MA_128052g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.04 OrthoFinder output from all 47 species
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.09 OrthoFinder output from all 47 species
MA_38485g0010 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.04 OrthoFinder output from all 47 species
MA_387336g0010 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.02 OrthoFinder output from all 47 species
MA_39587g0010 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.05 OrthoFinder output from all 47 species
MA_455059g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.14 OrthoFinder output from all 47 species
MA_845827g0010 No alias Pentatricopeptide repeat-containing protein At1g06710,... 0.05 OrthoFinder output from all 47 species
MA_929381g0010 OTP43 OTP43 mitochondrial RNA splicing factor 0.02 OrthoFinder output from all 47 species
MA_9740107g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
Mp1g21650.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.01 OrthoFinder output from all 47 species
Mp4g20290.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 OrthoFinder output from all 47 species
Ore_g08945 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g27162 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14416 PPR40 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo90583 No alias Pentatricopeptide repeat-containing protein At1g62910... 0.03 OrthoFinder output from all 47 species
Solyc01g006850.1.1 Solyc01g006850 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc01g097730.4.1 Solyc01g097730 Pentatricopeptide repeat-containing protein At3g60050... 0.06 OrthoFinder output from all 47 species
Solyc03g116540.1.1 Solyc03g116540 Pentatricopeptide repeat-containing protein At1g52640,... 0.05 OrthoFinder output from all 47 species
Solyc03g117570.3.1 Solyc03g117570 Pentatricopeptide repeat-containing protein At1g80880,... 0.05 OrthoFinder output from all 47 species
Solyc04g071280.3.1 Solyc04g071280 Pentatricopeptide repeat-containing protein At3g61360... 0.03 OrthoFinder output from all 47 species
Solyc04g076370.4.1 Solyc04g076370 Pentatricopeptide repeat-containing protein At2g27800,... 0.04 OrthoFinder output from all 47 species
Solyc04g079150.1.1 Solyc04g079150 Pentatricopeptide repeat-containing protein At1g73400,... 0.04 OrthoFinder output from all 47 species
Solyc05g008330.3.1 Solyc05g008330 Pentatricopeptide repeat-containing protein At1g71060,... 0.03 OrthoFinder output from all 47 species
Solyc09g097840.2.1 Solyc09g097840 Pentatricopeptide repeat-containing protein At5g18390,... 0.07 OrthoFinder output from all 47 species
Solyc11g070040.3.1 Solyc11g070040 Pentatricopeptide repeat-containing protein At1g77360,... 0.02 OrthoFinder output from all 47 species
Solyc11g071670.2.1 Solyc11g071670 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc12g043100.2.1 Solyc12g043100 group-II intron mitochondrial splicing factor (MISF68) 0.02 OrthoFinder output from all 47 species
Spa_g12536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02821 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g21176 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.1 OrthoFinder output from all 47 species
Zm00001e005758_P001 Zm00001e005758 Pentatricopeptide repeat-containing protein At1g77360,... 0.04 OrthoFinder output from all 47 species
Zm00001e006773_P001 Zm00001e006773 Pentatricopeptide repeat-containing protein At1g80550,... 0.06 OrthoFinder output from all 47 species
Zm00001e013118_P001 Zm00001e013118 Pentatricopeptide repeat-containing protein At3g61360... 0.02 OrthoFinder output from all 47 species
Zm00001e025816_P001 Zm00001e025816 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Zm00001e026896_P001 Zm00001e026896 Pentatricopeptide repeat-containing protein At3g62470,... 0.04 OrthoFinder output from all 47 species
Zm00001e028873_P001 Zm00001e028873 Pentatricopeptide repeat-containing protein At5g15010,... 0.05 OrthoFinder output from all 47 species
Zm00001e031478_P001 Zm00001e031478 Pentatricopeptide repeat-containing protein At3g62470,... 0.03 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.07 OrthoFinder output from all 47 species
Zm00001e036305_P001 Zm00001e036305 Pentatricopeptide repeat-containing protein At3g25210,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 182 210
IPR002885 Pentatricopeptide_repeat 145 175
IPR002885 Pentatricopeptide_repeat 528 576
IPR002885 Pentatricopeptide_repeat 702 751
IPR002885 Pentatricopeptide_repeat 597 644
IPR002885 Pentatricopeptide_repeat 285 331
IPR002885 Pentatricopeptide_repeat 453 485
IPR002885 Pentatricopeptide_repeat 664 696
IPR002885 Pentatricopeptide_repeat 383 414
IPR002885 Pentatricopeptide_repeat 244 275
No external refs found!