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  5. Msp_g07837

Msp_g07837


Description : primase component *(POLA3) of DNA polymerase alpha complex & original description: none


Gene families : OG0007515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007515_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g07837
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AT1G67320 No alias DNA primase, large subunit family 0.05 OrthoFinder output from all 47 species
Als_g00918 No alias primase component *(POLA3) of DNA polymerase alpha... 0.04 OrthoFinder output from all 47 species
Aop_g06919 No alias primase component *(POLA3) of DNA polymerase alpha... 0.04 OrthoFinder output from all 47 species
Azfi_s0242.g059810 No alias primase component *(POLA3) of DNA polymerase alpha... 0.06 OrthoFinder output from all 47 species
Ceric.22G004000.1 Ceric.22G004000 primase component *(POLA3) of DNA polymerase alpha... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.68 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.04 OrthoFinder output from all 47 species
Cre06.g293000 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.06 OrthoFinder output from all 47 species
Dac_g13828 No alias primase component *(POLA3) of DNA polymerase alpha... 0.11 OrthoFinder output from all 47 species
Dcu_g14762 No alias primase component *(POLA3) of DNA polymerase alpha... 0.09 OrthoFinder output from all 47 species
GSVIVT01029087001 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.04 OrthoFinder output from all 47 species
Gb_25310 No alias Probable DNA primase large subunit OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Gb_25312 No alias primase component POLA3 of DNA polymerase alpha complex 0.06 OrthoFinder output from all 47 species
LOC_Os07g22400.2 LOC_Os07g22400 primase component POLA3 of DNA polymerase alpha complex 0.08 OrthoFinder output from all 47 species
MA_99205g0020 No alias primase component POLA3 of DNA polymerase alpha complex 0.05 OrthoFinder output from all 47 species
Mp7g17480.1 No alias primase component POLA3 of DNA polymerase alpha complex 0.08 OrthoFinder output from all 47 species
Ppi_g63485 No alias primase component *(POLA3) of DNA polymerase alpha... 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015210 No alias primase component *(POLA3) of DNA polymerase alpha... 0.06 OrthoFinder output from all 47 species
Solyc04g045530.4.1 Solyc04g045530 primase component POLA3 of DNA polymerase alpha complex 0.06 OrthoFinder output from all 47 species
Spa_g08160 No alias primase component *(POLA3) of DNA polymerase alpha... 0.04 OrthoFinder output from all 47 species
Tin_g10410 No alias primase component *(POLA3) of DNA polymerase alpha... 0.08 OrthoFinder output from all 47 species
Zm00001e039405_P003 Zm00001e039405 primase component POLA3 of DNA polymerase alpha complex 0.03 OrthoFinder output from all 47 species
Zm00001e040751_P005 Zm00001e040751 primase component POLA3 of DNA polymerase alpha complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006269 DNA replication, synthesis of RNA primer IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
BP GO:0007265 Ras protein signal transduction IEP HCCA
BP GO:0007266 Rho protein signal transduction IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0010639 negative regulation of organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032780 negative regulation of ATP-dependent activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042555 MCM complex IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043462 regulation of ATP-dependent activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051095 regulation of helicase activity IEP HCCA
BP GO:0051097 negative regulation of helicase activity IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1905462 regulation of DNA duplex unwinding IEP HCCA
BP GO:1905463 negative regulation of DNA duplex unwinding IEP HCCA
BP GO:1905774 regulation of DNA helicase activity IEP HCCA
BP GO:1905775 negative regulation of DNA helicase activity IEP HCCA
BP GO:2001251 negative regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR007238 DNA_primase_lsu_euk/arc 176 441
No external refs found!