Smo58350 (PACid_15406379)


Aliases : PACid_15406379

Description : 27.3.11 RNA.regulation of transcription.C2H2 zinc finger family Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity. In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity. sensitive to proton rhizotoxicity 1 (STOP1) CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755) BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT5G22890.1) Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798 Bacteria - 22429 Metazoa - 974 Fungi - 991 Plants - 531 Viruses - 0 Other Eukaryotes - 9610 (source: NCBI BLink). & (loc_os01g65080.3 : 258.0


Gene families : OG_01_0001025 (Gene family) Phylogenetic Tree(s): OG0001025_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo58350
Cluster HCCA cluster: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AT5G22890 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Gene family
GSVIVT01004847001 No alias 27.3.11 RNA.regulation of transcription.C2H2 zinc finger... 0.02 Gene family
GSVIVT01031459001 No alias 27.3.11 RNA.regulation of transcription.C2H2 zinc finger... 0.03 Gene family
LOC_Os08g44830 Os08g0562300 27.3.11 RNA.regulation of transcription.C2H2 zinc finger... 0.02 Gene family
LOC_Os12g07280 Os12g0170400 27.3.11 RNA.regulation of transcription.C2H2 zinc finger... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013087 Znf_C2H2_type 22 43
No external refs found!