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  5. Msp_g06990

Msp_g06990 (AGL16)


Aliases : AGL16

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g06990

Target Alias Description ECC score Gene Family Method Actions
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT1G26310 AGL10, CAL1, CAL K-box region and MADS-box transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT2G22540 SVP, AGL22 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT2G24840 AGL61, DIA AGAMOUS-like 61 0.03 OrthoFinder output from all 47 species
AT2G45650 AGL6 AGAMOUS-like 6 0.04 OrthoFinder output from all 47 species
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT5G60910 AGL8, FUL AGAMOUS-like 8 0.03 OrthoFinder output from all 47 species
Adi_g021209 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g045544 No alias MADS/AGL-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g106519 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06477 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11193 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13176 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g32548 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17826.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene68989.t2 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007710 AGL6 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0704.g082655 SHP2, AGL5 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g16031 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.08G048300.1 AGL42, Ceric.08G048300 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.12G051300.1 GL19, AGL19,... not classified & original description: pacid=50601537... 0.03 OrthoFinder output from all 47 species
Ceric.12G051800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.12G052200.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.27G057900.1 STK, AGL11,... MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.37G052700.1 AGL104, Ceric.37G052700 MADS/AGL-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Dac_g20590 AGL30 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g02782 AGL65 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g20252 AGL8, FUL MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25870 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g38503 AGL42 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07431 AGL6 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01008560001 SOC1, AGL20, ATSOC1 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01019883001 GL19, AGL19 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01025945001 STK, AGL11 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01026207001 AGL32, TT16, ABS RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01035477001 AGL30 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01038474001 AGL16 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
Gb_16301 STK, AGL11 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Gb_34101 SVP, AGL22 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_41550 No alias transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os01g66290.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os03g54170.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os06g01890.1 SOC1, AGL20,... transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
LOC_Os06g06750.1 AGL9, SEP3,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os06g11970.1 AGL66, LOC_Os06g11970 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os07g01820.1 AGL7, AP1, LOC_Os07g01820 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Lfl_g16827 AGL21 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g25148 AGL10, CAL1, CAL not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g32782 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g37644 AGL21 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_1090469g0010 SOC1, AGL20, ATSOC1 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_126898g0010 AGL71 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_333471g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Msp_g24760 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44138 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g36418 No alias MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g41259 AGL3, SEP4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g36311 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g093965.2.1 SOC1, AGL20,... MADS-box protein SOC1 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Solyc02g065730.2.1 AGL8, FUL, Solyc02g065730 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Solyc03g114840.3.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
Solyc04g005320.3.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e005708_P002 AGL2, SEP1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e012024_P001 AGL4, SEP2,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Zm00001e023236_P005 AGL6, Zm00001e023236 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e027852_P001 AGL62, Zm00001e027852 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e031267_P003 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002487 TF_Kbox 122 207
IPR002100 TF_MADSbox 48 95
No external refs found!