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  5. Msp_g06486

Msp_g06486


Description : not classified & original description: none


Gene families : OG0006792 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006792_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g06486
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00233660 evm_27.TU.AmTr_v1... GTP-binding protein At3g49725, chloroplastic... 0.08 OrthoFinder output from all 47 species
Adi_g059600 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g03313 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16169 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g10418 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.34G037600.1 Ceric.34G037600 not classified & original description: pacid=50623913... 0.03 OrthoFinder output from all 47 species
Lfl_g27465 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_10437248g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp8g01100.1 No alias GTP-binding protein At3g49725, chloroplastic... 0.02 OrthoFinder output from all 47 species
Ore_g19828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g64021 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g080770.3.1 Solyc04g080770 GTP-binding protein At3g49725, chloroplastic... 0.03 OrthoFinder output from all 47 species
Spa_g07834 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR025121 GTPase_HflX_N 195 283
IPR006073 GTP-bd 371 489
IPR032305 GTP-bd_M 286 363
IPR045498 HflX_C 502 569
No external refs found!