Smo54466 (PACid_15417822)


Aliases : PACid_15417822

Description : 10.5.1.1 cell wall.cell wall proteins.AGPs.AGP FASCICLIN-like arabinogalactan protein 17 precursor (FLA17) FUNCTIONS IN: molecular_function unknown INVOLVED IN: cell adhesion LOCATED IN: vacuole EXPRESSED IN: guard cell CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782) BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 18 precursor (TAIR:AT3G11700.1) Has 803 Blast hits to 777 proteins in 229 species: Archae - 10 Bacteria - 420 Metazoa - 40 Fungi - 21 Plants - 196 Viruses - 1 Other Eukaryotes - 115 (source: NCBI BLink). & (loc_os03g57460.1 : 312.0


Gene families : OG_01_0002215 (Gene family) Phylogenetic Tree(s): OG0002215_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo54466
Cluster HCCA cluster: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AT2G35860 FLA16 FASCICLIN-like arabinogalactan protein 16 precursor 0.05 Gene family
AT3G11700 FLA18 FASCICLIN-like arabinogalactan protein 18 precursor 0.06 Gene family
AT5G06390 FLA17 FASCICLIN-like arabinogalactan protein 17 precursor 0.06 Gene family
GSVIVT01022545001 No alias 35.1 not assigned.no ontology FASCICLIN-like... 0.08 Gene family
GSVIVT01022548001 No alias 35.1 not assigned.no ontology FASCICLIN-like... 0.04 Gene family
LOC_Os03g57460 Os03g0788600 35.1 not assigned.no ontology FASCICLIN-like... 0.04 Gene family
LOC_Os07g06680 Os07g0160600 35.1 not assigned.no ontology FASCICLIN-like... 0.06 Gene family
MA_216501g0010 No alias 10.5.1.1 cell wall.cell wall proteins.AGPs.AGP... 0.02 Gene family
MA_28601g0010 No alias 10.5.1.1 cell wall.cell wall proteins.AGPs.AGP... 0.01 Gene family
MA_28601g0020 No alias 10.5.1.1 cell wall.cell wall proteins.AGPs.AGP... 0.02 Gene family
MA_43595g0010 No alias 10.5.1.1 cell wall.cell wall proteins.AGPs.AGP... 0.04 Gene family
Solyc01g006825.1.1 Solyc01g006825.1 10.5.1.1 cell wall.cell wall proteins.AGPs.AGP... 0.07 Gene family
Solyc10g081720.2.1 Solyc10g081720.2 10.5.1.1 cell wall.cell wall proteins.AGPs.AGP... 0.09 Gene family
Zm00001d013108 GRMZM2G027825 35.1 not assigned.no ontology FASCICLIN-like... 0.07 Gene family
Zm00001d034373 GRMZM2G329181 35.1 not assigned.no ontology FASCICLIN-like... 0.07 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000782 FAS1_domain 267 334
No external refs found!