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  5. Msp_g06362

Msp_g06362


Description : nucleoporin of nuclear pore complex *(NUP98) & original description: none


Gene families : OG0001205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001205_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g06362

Target Alias Description ECC score Gene Family Method Actions
AT1G10390 No alias Nucleoporin autopeptidase 0.03 OrthoFinder output from all 47 species
Adi_g086878 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Ala_g06973 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.05 OrthoFinder output from all 47 species
Aop_g08739 NUP96, PRE, SAR3, MOS3 nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0002.g001507 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.05 OrthoFinder output from all 47 species
Cba_g37342 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08969 NUP96, PRE, SAR3, MOS3 nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Mp2g01050.1 NUP96, PRE, SAR3, MOS3 NUP96 scaffold nucleoporin of nuclear pore complex.... 0.04 OrthoFinder output from all 47 species
Ore_g26256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01378 NUP96, PRE, SAR3, MOS3 nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g03244 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.05 OrthoFinder output from all 47 species
Solyc04g007280.3.1 Solyc04g007280 NUP98 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Spa_g06165 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Tin_g11653 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0006913 nucleocytoplasmic transport IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007230 Nup98_auto-Pept-S59_dom 819 965
No external refs found!