Smo48392 (PACid_15421526)


Aliases : PACid_15421526

Description : 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING RING/U-box superfamily protein FUNCTIONS IN: zinc ion binding EXPRESSED IN: 22 plant structures EXPRESSED DURING: 13 growth stages CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841) BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger


Gene families : OG_01_0000250 (Gene family) Phylogenetic Tree(s): OG0000250_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo48392
Cluster HCCA cluster: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AT2G25370 No alias RING/U-box superfamily protein 0.03 Gene family
AT5G37560 No alias RING/U-box superfamily protein 0.02 Gene family
Cpa|evm.model.tig00001128.21 No alias No description available 0.02 Gene family
Solyc01g110090.1.1 Solyc01g110090.1 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Zm00001d050091 GRMZM2G053511 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002867 IBR_dom 76 133
No external refs found!