Msp_g04427


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g04427

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.06 OrthoFinder output from all 47 species
Adi_g021432 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055183 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06424 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g07824 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g13180 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g14340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20702 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g24748 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g31152 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03728 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g17754 OTP84 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene25075.t1 Aspi01Gene25075 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35981.t1 Aspi01Gene35981 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0005.g009022 No alias not classified & original description: CDS=1-2334 0.08 OrthoFinder output from all 47 species
Azfi_s0410.g068507 No alias not classified & original description: CDS=1-2022 0.05 OrthoFinder output from all 47 species
Ceric.23G013400.1 Ceric.23G013400 not classified & original description: pacid=50609831... 0.05 OrthoFinder output from all 47 species
Ceric.26G058400.1 VAC1, ECB2,... not classified & original description: pacid=50598871... 0.06 OrthoFinder output from all 47 species
Ceric.36G051900.1 Ceric.36G051900 not classified & original description: pacid=50568048... 0.05 OrthoFinder output from all 47 species
Ceric.39G011500.1 Ceric.39G011500 not classified & original description: pacid=50582697... 0.03 OrthoFinder output from all 47 species
Dac_g30123 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g04416 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01010898001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.08 OrthoFinder output from all 47 species
Len_g03385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03724 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g03753 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g17343 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18047 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g18930 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g44834 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g47776 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g49951 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g04332 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Msp_g30310 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g18027 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g27737 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g29911 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g04317 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01222 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g05328 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Ppi_g56263 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo99756 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.02 OrthoFinder output from all 47 species
Spa_g04477 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20180 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53142 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g35237 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g39862 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007597_P001 Zm00001e007597 Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 31 77
IPR002885 Pentatricopeptide_repeat 132 179
IPR002885 Pentatricopeptide_repeat 234 281
No external refs found!