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Aliases : CRR22
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00022p00156450 | REME1,... | Pentatricopeptide repeat-containing protein At2g03880,... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00099p00072730 | MEF21,... | Pentatricopeptide repeat-containing protein At5g66520... | 0.03 | OrthoFinder output from all 47 species | |
| AT4G18840 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT4G33990 | EMB2758 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g043352 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g067160 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g069231 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g13994 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g06261 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g14128 | CRR2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g30201 | CRR22 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g28195 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aob_g32957 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g20195 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g28706 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0008.g011649 | No alias | not classified & original description: CDS=1-3195 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0010.g012416 | No alias | not classified & original description: CDS=1-1722 | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0019.g015073 | No alias | not classified & original description: CDS=1-2832 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0021.g015711 | No alias | not classified & original description: CDS=1-3111 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0028.g023821 | No alias | not classified & original description: CDS=1-2478 | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0033.g025102 | No alias | not classified & original description: CDS=1-3510 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0040.g026628 | No alias | not classified & original description: CDS=1-2499 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0045.g029802 | No alias | not classified & original description: CDS=1-2208 | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0047.g030252 | No alias | not classified & original description: CDS=1-2775 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0048.g030525 | No alias | not classified & original description: CDS=1-2520 | 0.1 | OrthoFinder output from all 47 species | |
| Azfi_s0076.g037861 | No alias | not classified & original description: CDS=1-1125 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0082.g038704 | No alias | not classified & original description: CDS=1-2661 | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0095.g043616 | No alias | not classified & original description: CDS=1-3288 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0102.g044571 | No alias | not classified & original description: CDS=1-2829 | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0109.g045373 | No alias | not classified & original description: CDS=1-2985 | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0444.g070599 | No alias | not classified & original description: CDS=1-3282 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0471.g072918 | No alias | not classified & original description: CDS=1-3447 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0880.g091024 | No alias | not classified & original description: CDS=182-3622 | 0.05 | OrthoFinder output from all 47 species | |
| Cba_g04626 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g19909 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g35120 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g36067 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g74873 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.01G107500.1 | Ceric.01G107500 | not classified & original description: pacid=50592273... | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.02G042700.1 | Ceric.02G042700 | not classified & original description: pacid=50584264... | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.02G043000.1 | Ceric.02G043000 | not classified & original description: pacid=50585529... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.06G014300.1 | Ceric.06G014300 | not classified & original description: pacid=50620883... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.07G000400.1 | Ceric.07G000400 | not classified & original description: pacid=50627195... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.07G024400.1 | Ceric.07G024400 | not classified & original description: pacid=50626298... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.11G015200.1 | Ceric.11G015200 | not classified & original description: pacid=50595684... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.11G041000.1 | Ceric.11G041000 | not classified & original description: pacid=50594870... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.13G028100.1 | Ceric.13G028100 | not classified & original description: pacid=50635194... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.17G054900.1 | DOT4, Ceric.17G054900 | not classified & original description: pacid=50617812... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.17G079000.1 | Ceric.17G079000 | not classified & original description: pacid=50617699... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.1Z005100.1 | Ceric.1Z005100 | not classified & original description: pacid=50567700... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.23G042100.1 | Ceric.23G042100 | not classified & original description: pacid=50611070... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.25G002100.1 | Ceric.25G002100 | not classified & original description: pacid=50593112... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.26G006200.1 | Ceric.26G006200 | not classified & original description: pacid=50598886... | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.28G051100.1 | Ceric.28G051100 | not classified & original description: pacid=50570532... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.30G007900.1 | Ceric.30G007900 | not classified & original description: pacid=50608292... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.30G071100.1 | Ceric.30G071100 | not classified & original description: pacid=50608720... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.31G027200.1 | OTP86, Ceric.31G027200 | not classified & original description: pacid=50574199... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.35G061000.1 | CRR22, Ceric.35G061000 | not classified & original description: pacid=50581720... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.39G011500.1 | Ceric.39G011500 | not classified & original description: pacid=50582697... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g35266 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g42988 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g05649 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g05661 | DOT4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g05682 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g06339 | CRR22 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g07693 | CRR22 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g14779 | CRR22 | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Dcu_g17305 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g18210 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g21411 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g22287 | No alias | not classified & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Dcu_g26715 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g32153 | CRR22 | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Dcu_g37654 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g45852 | CRR22 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g51593 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dde_g04453 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g18169 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g21829 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g51445 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g20812 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01003804001 | CRR22 | Pentatricopeptide repeat-containing protein At5g16860... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01036975001 | EMB2758 | Pentatricopeptide repeat-containing protein At4g33990... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_33726 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os01g60250.1 | LOC_Os01g60250 | Pentatricopeptide repeat-containing protein At3g14730... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os06g40860.1 | LOC_Os06g40860 | Pentatricopeptide repeat-containing protein At1g03540... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os07g07620.1 | emb1899, EMB175,... | Pentatricopeptide repeat-containing protein At5g03800... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os07g20420.1 | LOC_Os07g20420 | Pentatricopeptide repeat-containing protein At3g26782,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os08g05750.1 | LOC_Os08g05750 | Pentatricopeptide repeat-containing protein At4g16835,... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g41161 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Len_g54971 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g05723 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g06094 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g06745 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g13946 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g24046 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g33055 | DOT4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_103380g0010 | No alias | Pentatricopeptide repeat-containing protein At3g24000,... | 0.06 | OrthoFinder output from all 47 species | |
| MA_116442g0010 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.04 | OrthoFinder output from all 47 species | |
| MA_8893194g0010 | MEF1 | RNA editing factor (MEF1) | 0.06 | OrthoFinder output from all 47 species | |
| Nbi_g04936 | OTP84 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g13680 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Nbi_g16043 | No alias | not classified & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Nbi_g17377 | OTP84 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Nbi_g35181 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g38399 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ore_g41725 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g03074 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g03426 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g10933 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g13020 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g13570 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g13599 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g19712 | CRR22 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g31318 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g51106 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g63651 | CRR22 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g63652 | VAC1, ECB2, ATECB2 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g63661 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g03779 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g04611 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g06929 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g31283 | CRR22 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g59292 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0006.g003098 | No alias | not classified & original description: CDS=1-2883 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0010.g004867 | No alias | not classified & original description: CDS=342-1943 | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0013.g005912 | No alias | not classified & original description: CDS=1-3210 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0039.g012266 | No alias | not classified & original description: CDS=1-3753 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0059.g015175 | No alias | not classified & original description: CDS=1-2994 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0068.g016434 | No alias | not classified & original description: CDS=1-1746 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0085.g018323 | No alias | not classified & original description: CDS=1-1728 | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0109.g020573 | No alias | not classified & original description: CDS=184-1233 | 0.03 | OrthoFinder output from all 47 species | |
| Smo82255 | CRR2 | Pentatricopeptide repeat-containing protein At4g33990... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc01g100340.4.1 | Solyc01g100340 | Pentatricopeptide repeat-containing protein At1g09190... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g17686 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g18026 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g21818 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g22837 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g28927 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g47874 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g52644 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g55537 | DOT4 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g06121 | OTP86 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g06419 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Tin_g10336 | EMB2758 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g22746 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g23117 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g26533 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g29865 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g30039 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e005246_P001 | Zm00001e005246 | Pentatricopeptide repeat-containing protein At2g41080... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e011467_P004 | emb1899, EMB175,... | Pentatricopeptide repeat-containing protein At5g03800... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e030553_P001 | Zm00001e030553 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 291 | 321 |
| IPR002885 | Pentatricopeptide_repeat | 87 | 112 |
| IPR002885 | Pentatricopeptide_repeat | 468 | 490 |
| IPR002885 | Pentatricopeptide_repeat | 263 | 288 |
| IPR002885 | Pentatricopeptide_repeat | 365 | 388 |
| IPR002885 | Pentatricopeptide_repeat | 493 | 540 |
| IPR002885 | Pentatricopeptide_repeat | 391 | 438 |
| IPR002885 | Pentatricopeptide_repeat | 186 | 233 |
| No external refs found! |