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  5. Msp_g02349

Msp_g02349


Description : component *(uL3c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0005291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005291_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g02349

Target Alias Description ECC score Gene Family Method Actions
AT2G43030 No alias Ribosomal protein L3 family protein 0.08 OrthoFinder output from all 47 species
Adi_g022052 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ala_g05869 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aob_g03365 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aop_g26780 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Aspi01Gene69382.t1 Aspi01Gene69382 component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g03036 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.08G072800.1 Ceric.08G072800 component *(uL3c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Cre48.g761197 No alias Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
Dac_g08147 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dcu_g02623 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Dde_g02079 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ehy_g00510 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01019355001 No alias 50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea 0.06 OrthoFinder output from all 47 species
Gb_26251 No alias component psRPL3 of large ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
LOC_Os02g04460.1 LOC_Os02g04460 component psRPL3 of large ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Len_g00379 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Lfl_g10299 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
MA_10432831g0010 No alias component psRPL3 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Mp1g03320.1 No alias component psRPL3 of large ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Nbi_g00713 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Ore_g11263 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Pir_g05542 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pp3c16_1020V3.1 Pp3c16_1020 Ribosomal protein L3 family protein 0.02 OrthoFinder output from all 47 species
Pp3c6_28830V3.1 Pp3c6_28830 Ribosomal protein L3 family protein 0.03 OrthoFinder output from all 47 species
Ppi_g07342 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015211 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Sam_g11021 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Sam_g24523 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Solyc06g051200.3.1 Solyc06g051200 component psRPL3 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Spa_g05012 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Tin_g06461 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0017006 protein-tetrapyrrole linkage IEP HCCA
BP GO:0017007 protein-bilin linkage IEP HCCA
BP GO:0017009 protein-phycocyanobilin linkage IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 176 263
No external refs found!