Aliases : VAC1, ECB2, ATECB2
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00002p00270380 | OTP86,... | RNA processing.organelle machineries.RNA... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00008p00232800 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g32430,... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00022p00156450 | REME1,... | Pentatricopeptide repeat-containing protein At2g03880,... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00109p00094190 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g04780,... | 0.03 | OrthoFinder output from all 47 species | |
AT2G21090 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
AT5G09950 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
Adi_g002045 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aob_g08304 | EMB2758 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Aop_g20313 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0001.g000442 | No alias | not classified & original description: CDS=1-3240 | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0013.g013183 | No alias | not classified & original description: CDS=29-679 | 0.05 | OrthoFinder output from all 47 species | |
Azfi_s0021.g015640 | No alias | not classified & original description: CDS=1-1965 | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0047.g030253 | CRR22 | not classified & original description: CDS=1-1500 | 0.05 | OrthoFinder output from all 47 species | |
Azfi_s0048.g030532 | No alias | not classified & original description: CDS=1-2100 | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0059.g034591 | No alias | not classified & original description: CDS=1-1749 | 0.05 | OrthoFinder output from all 47 species | |
Azfi_s0179.g056242 | No alias | not classified & original description: CDS=1-2559 | 0.05 | OrthoFinder output from all 47 species | |
Azfi_s0236.g059498 | No alias | not classified & original description: CDS=1-2331 | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0880.g091024 | No alias | not classified & original description: CDS=182-3622 | 0.05 | OrthoFinder output from all 47 species | |
Cba_g34636 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Cba_g76621 | EMB2758 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g38580 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01010869001 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os01g58630.1 | LOC_Os01g58630 | Pentatricopeptide repeat-containing protein At5g15300... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os05g24890.1 | LOC_Os05g24890 | Pentatricopeptide repeat-containing protein At2g34400... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os08g28830.1 | LOC_Os08g28830 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
MA_103380g0010 | No alias | Pentatricopeptide repeat-containing protein At3g24000,... | 0.05 | OrthoFinder output from all 47 species | |
Mp8g01790.1 | No alias | ssDNA-binding protein (OSB) | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g38648 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Ppi_g44704 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Smo92426 | EMB2758 | Pentatricopeptide repeat-containing protein At4g02750... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g02585 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Spa_g14323 | CRR22 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Spa_g55588 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008134 | transcription factor binding | IEP | HCCA |
MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
MF | GO:0016887 | ATP hydrolysis activity | IEP | HCCA |
MF | GO:0017025 | TBP-class protein binding | IEP | HCCA |
MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | HCCA |
MF | GO:0140296 | general transcription initiation factor binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 558 | 617 |
IPR002885 | Pentatricopeptide_repeat | 233 | 261 |
IPR002885 | Pentatricopeptide_repeat | 205 | 230 |
IPR002885 | Pentatricopeptide_repeat | 508 | 530 |
IPR002885 | Pentatricopeptide_repeat | 435 | 464 |
IPR002885 | Pentatricopeptide_repeat | 129 | 176 |
IPR002885 | Pentatricopeptide_repeat | 331 | 378 |
IPR046848 | E_motif | 651 | 689 |
No external refs found! |