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  5. Msp_g01496

Msp_g01496 (SC3)


Aliases : SC3

Description : regulatory protein *(SCAMP) of exocytic trafficking & original description: none


Gene families : OG0001155 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001155_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g01496
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
Als_g08101 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Cre02.g089900 No alias Secretory carrier-associated membrane protein 5 OS=Oryza... 0.01 OrthoFinder output from all 47 species
GSVIVT01030566001 No alias Secretory carrier-associated membrane protein 1... 0.03 OrthoFinder output from all 47 species
LOC_Os01g57220.1 LOC_Os01g57220 Secretory carrier-associated membrane protein 2 OS=Oryza... 0.02 OrthoFinder output from all 47 species
MA_8570231g0010 No alias Secretory carrier-associated membrane protein 1... 0.02 OrthoFinder output from all 47 species
Mp2g20380.1 SC3 Putative secretory carrier-associated membrane protein 1... 0.04 OrthoFinder output from all 47 species
Ppi_g11149 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
Solyc10g009180.3.1 SC3, Solyc10g009180 Secretory carrier-associated membrane protein 3... 0.02 OrthoFinder output from all 47 species
Tin_g08478 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
Zm00001e019630_P002 Zm00001e019630 Secretory carrier-associated membrane protein 2 OS=Oryza... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007273 SCAMP 99 271
No external refs found!