Msp_g00928


Description : component *(uS6c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0003772 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003772_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g00928
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00220150 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
AT1G64510 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.06 OrthoFinder output from all 47 species
Aev_g04389 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ala_g02976 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Als_g19098 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Aob_g08781 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aop_g30964 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aspi01Gene20278.t1 Aspi01Gene20278 component *(uS6c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Azfi_s0051.g031290 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Cba_g09290 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cba_g26011 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.10G083400.1 Ceric.10G083400 component *(uS6c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.32G022300.1 Ceric.32G022300 component *(uS6c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Cre12.g520600 No alias Protein biosynthesis.organelle translation... 0.08 OrthoFinder output from all 47 species
Dac_g02644 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dcu_g40728 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dde_g06910 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ehy_g04427 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
GSVIVT01019593001 No alias Protein biosynthesis.organelle translation... 0.09 OrthoFinder output from all 47 species
LOC_Os03g62630.1 LOC_Os03g62630 component psRPS6 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Len_g38836 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Lfl_g06876 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
MA_10429326g0010 No alias component psRPS6 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Mp4g07210.1 No alias component psRPS6 of small ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Nbi_g25871 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Ore_g08524 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pir_g00320 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Pnu_g10315 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ppi_g06171 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009778 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Sam_g19470 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Solyc08g082690.2.1 Solyc08g082690 component psRPS6 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Spa_g17715 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Spa_g37875 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Tin_g06363 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP HCCA
MF GO:0051920 peroxiredoxin activity IEP HCCA
MF GO:0098809 nitrite reductase activity IEP HCCA
InterPro domains Description Start Stop
IPR000529 Ribosomal_S6 113 210
No external refs found!