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  5. Msp_g00670

Msp_g00670 (PTAC10, PDE312)


Aliases : PTAC10, PDE312

Description : cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10) & original description: none


Gene families : OG0006411 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g00670
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00203240 PTAC10, PDE312,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
Adi_g052271 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.03 OrthoFinder output from all 47 species
Aop_g07043 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.03 OrthoFinder output from all 47 species
Ceric.02G035300.1 PTAC10, PDE312,... cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.05 OrthoFinder output from all 47 species
GSVIVT01008490001 PTAC10, PDE312 RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
LOC_Os01g67570.1 PTAC10, PDE312,... PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
MA_10428299g0010 PTAC10, PDE312 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_14025g0020 PTAC10, PDE312 PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Ore_g05620 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.02 OrthoFinder output from all 47 species
Spa_g12662 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!