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  5. Msp_g00333

Msp_g00333


Description : E3 ubiquitin ligase *(RMA/MUSE) & original description: none


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g00333

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00165910 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Aspi01Gene20236.t1 Aspi01Gene20236 E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25032 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g38674 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44544 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0103.g020008 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-681 0.03 OrthoFinder output from all 47 species
Solyc02g065540.3.1 Solyc02g065540 RING-HC-class E3 ligase 0.05 OrthoFinder output from all 47 species
Solyc02g078320.3.1 RMA3, ATRMA3,... RING-HC-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc02g089870.3.1 Solyc02g089870 RING-HC-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc10g051270.2.1 Solyc10g051270 RING-HC-class E3 ligase 0.06 OrthoFinder output from all 47 species
Tin_g30114 No alias E3 ubiquiTin ligase *(RMA/MUSE) & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e028986_P001 Zm00001e028986 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR027370 Znf-RING_euk 36 71
No external refs found!