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  5. Msp_g00164

Msp_g00164


Description : R-loop reader protein *(ALBA1/2) & original description: none


Gene families : OG0001187 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g00164

Target Alias Description ECC score Gene Family Method Actions
AT3G04620 No alias Alba DNA/RNA-binding protein 0.02 OrthoFinder output from all 47 species
Adi_g044986 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G088300.1 Ceric.06G088300 R-loop reader protein *(ALBA1/2) & original description:... 0.04 OrthoFinder output from all 47 species
GSVIVT01017289001 No alias Uncharacterized protein At2g34160 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Sam_g09152 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e024990_P001 Zm00001e024990 R-loop reader protein (ALBA1/2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002775 DNA/RNA-bd_Alba-like 78 139
No external refs found!