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  5. Smo444767

Smo444767 (PACid_15419040)


Aliases : PACid_15419040

Description : 29.2.1.2.2.11 protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L11 Ribosomal L5P family protein FUNCTIONS IN: structural constituent of ribosome INVOLVED IN: translation LOCATED IN: cytosolic large ribosomal subunit, vacuole EXPRESSED IN: male gametophyte, leaf CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, conserved site (InterPro:IPR020929), Ribosomal protein L5, N-terminal (InterPro:IPR020927), Ribosomal protein L5, C-terminal (InterPro:IPR020928) BEST Arabidopsis thaliana protein match is: ribosomal protein L16B (TAIR:AT4G18730.1) Has 7854 Blast hits to 7854 proteins in 2814 species: Archae - 312 Bacteria - 5083 Metazoa - 254 Fungi - 163 Plants - 278 Viruses - 0 Other Eukaryotes - 1764 (source: NCBI BLink). & (chl4|511164 : 261.0


Gene families : OG_01_0001235 (Gene family) Phylogenetic Tree(s): OG0001235_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo444767
Cluster HCCA cluster: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT2G42740 RPL16A ribosomal protein large subunit 16A 0.07 Gene family
AT3G58700 No alias Ribosomal L5P family protein 0.23 Gene family
AT4G18730 RPL16B ribosomal protein L16B 0.27 Gene family
AT5G45775 No alias Ribosomal L5P family protein 0.33 Gene family
Cpa|evm.model.tig00020610.38 No alias 29.2.1.2.2.16 protein.synthesis.ribosomal... 0.13 Gene family
Cre01.g027000 No alias 29.2.1.2.2.16 protein.synthesis.ribosomal... 0.22 Gene family
GSVIVT01020743001 No alias 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.19 Gene family
GSVIVT01021244001 No alias 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.19 Gene family
LOC_Os01g10820 Os01g0205500 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.19 Gene family
LOC_Os05g11710 Os05g0207300 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.22 Gene family
LOC_Os06g35730 Os06g0550000 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.14 Gene family
MA_74060g0010 No alias 29.2.1.2.2.16 protein.synthesis.ribosomal... 0.04 Gene family
MA_86694g0010 No alias 29.2.1.2.2.16 protein.synthesis.ribosomal... 0.1 Gene family
Solyc02g086240.3.1 Solyc02g086240.3 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.24 Gene family
Solyc10g007970.2.1 Solyc10g007970.2 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.19 Gene family
Solyc12g010930.2.1 Solyc12g010930.2 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.26 Gene family
Zm00001d010016 GRMZM5G813584 29.2.1.2.2.16 protein.synthesis.ribosomal... 0.22 Gene family
Zm00001d016200 GRMZM2G014444 29.2.1.2.2.16 protein.synthesis.ribosomal... 0.2 Gene family
Zm00001d046317 GRMZM2G001816 29.2.1.2.2.16 protein.synthesis.ribosomal... 0.25 Gene family
Zm00001d053547 GRMZM2G018770 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.25 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR031309 Ribosomal_L5_C 63 161
No external refs found!