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  5. Tin_g45472

Tin_g45472


Description : not classified & original description: none


Gene families : OG0007930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007930_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g45472

Target Alias Description ECC score Gene Family Method Actions
AT4G12740 No alias HhH-GPD base excision DNA repair family protein 0.03 OrthoFinder output from all 47 species
Aop_g08040 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Azfi_s0182.g056420 No alias not classified & original description: CDS=471-1670 0.04 OrthoFinder output from all 47 species
Cre02.g082000 No alias Adenine DNA glycosylase OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc09g018850.3.1 Solyc09g018850 Adenine DNA glycosylase OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR029119 MutY_C 342 470
IPR003265 HhH-GPD_domain 110 244
IPR000445 HhH_motif 176 203
No external refs found!