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  5. Tin_g45162

Tin_g45162 (ATRAD54, CHR25, RAD54)


Aliases : ATRAD54, CHR25, RAD54

Description : chromaTin remodeling factor *(RAD54) & original description: none


Gene families : OG0003309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003309_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g45162
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00126p00116180 ATRAD54, CHR25,... Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Ceric.12G046200.1 ATRAD54, CHR25,... chromatin remodeling factor *(RAD54) & original... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020614.39 ATRAD54, CHR25, RAD54 Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Cre03.g189000 ATRAD54, CHR25, RAD54 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Cre10.g430950 ATRAD54, CHR25, RAD54 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Dcu_g39643 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031756001 ATRAD54, CHR25, RAD54 Protein CHROMATIN REMODELING 25 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_13098 ATRAD54, CHR25, RAD54 Protein CHROMATIN REMODELING 25 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_13099 ATRAD54, CHR25, RAD54 DNA repair and recombination protein RAD54 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Gb_22245 ATRAD54, CHR25, RAD54 DNA repair and recombination protein RAD54 OS=Oryza... 0.04 OrthoFinder output from all 47 species
Solyc04g056410.3.1 ATRAD54, CHR25,... chromatin remodeling factor (Rad54) 0.03 OrthoFinder output from all 47 species
Spa_g37488 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g49299 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e015936_P001 ATRAD54, CHR25,... chromatin remodeling factor (Rad54) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 150 465
IPR001650 Helicase_C 515 624
No external refs found!