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  5. Tin_g44706

Tin_g44706


Description : not classified & original description: none


Gene families : OG0002047 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002047_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g44706

Target Alias Description ECC score Gene Family Method Actions
Ala_g28712 ATLUP2, LUP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07397 ATLUP2, LUP2 EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17465 ATLUP2, LUP2 squalene-hopene cyclase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g55523 No alias squalene-hopene cyclase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10453.t1 ATLUP2, LUP2,... squalene-hopene cyclase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene24548.t1 Aspi01Gene24548 squalene-hopene cyclase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene24549.t1 ATLUP2, LUP2,... EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24550.t1 Aspi01Gene24550 squalene-hopene cyclase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24551.t1 ATLUP2, LUP2,... squalene-hopene cyclase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene24552.t1 Aspi01Gene24552 squalene-hopene cyclase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36059.t1 ATLUP2, LUP2,... squalene-hopene cyclase & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene63178.t1 Aspi01Gene63178 EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63179.t1 Aspi01Gene63179 EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05266 ATLUP2, LUP2 EC_5.4 intramolecular transferase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.1Z160100.1 ATLUP2, LUP2,... not classified & original description: pacid=50632874... 0.01 OrthoFinder output from all 47 species
Dde_g29334 No alias EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g31336 ATLUP2, LUP2 EC_5.4 intramolecular transferase & original description: none 0.05 OrthoFinder output from all 47 species
Mp8g14000.1 THAS1, THAS Dammaradiene synthase OS=Dryopteris crassirhizoma... 0.02 OrthoFinder output from all 47 species
Mp8g14150.1 LAS1 Dammaradiene synthase OS=Dryopteris crassirhizoma... 0.02 OrthoFinder output from all 47 species
Nbi_g43954 ATLUP2, LUP2 squalene-hopene cyclase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g42306 No alias EC_5.4 intramolecular transferase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05657 No alias squalene-hopene cyclase & original description: none 0.19 OrthoFinder output from all 47 species
Ppi_g15284 ATLUP2, LUP2 squalene-hopene cyclase & original description: none 0.15 OrthoFinder output from all 47 species
Ppi_g15618 No alias not classified & original description: none 0.17 OrthoFinder output from all 47 species
Ppi_g42034 ATLUP2, LUP2 squalene-hopene cyclase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004522 ATLUP2, LUP2 squalene-hopene cyclase & original description: CDS=1-2067 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007471 ATLUP2, LUP2 squalene-hopene cyclase & original description: CDS=1-2091 0.03 OrthoFinder output from all 47 species
Spa_g37330 ATLUP2, LUP2 squalene-hopene cyclase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR032696 SQ_cyclase_C 2 89
No external refs found!