Aliases : PACid_15414390
Description : 27.3.67 RNA.regulation of transcription.putative transcription regulator PHD finger family protein FUNCTIONS IN: zinc ion binding EXPRESSED IN: 23 plant structures EXPRESSED DURING: 13 growth stages CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787) BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT3G52100.1) Has 2616 Blast hits to 2466 proteins in 178 species: Archae - 0 Bacteria - 13 Metazoa - 2009 Fungi - 82 Plants - 239 Viruses - 0 Other Eukaryotes - 273 (source: NCBI BLink). & (loc_os12g34330.1 : 330.0
Gene families : OG_01_0001856 (Gene family) Phylogenetic Tree(s): OG0001856_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR network (cutoff 100): Smo444121 | |
Cluster | HCCA cluster: Cluster_172 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
LOC_Os12g34330 | Os12g0527800 | 27.3.67 RNA.regulation of transcription.putative... | 0.02 | Gene family | |
Solyc01g087430.3.1 | Solyc01g087430.3 | 27.3.67 RNA.regulation of transcription.putative... | 0.03 | Gene family | |
Zm00001d023914 | GRMZM2G365888 | 27.3.67 RNA.regulation of transcription.putative... | 0.03 | Gene family | |
Zm00001d041708 | GRMZM2G081350 | 27.3.67 RNA.regulation of transcription.putative... | 0.02 | Gene family |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR019787 | Znf_PHD-finger | 317 | 372 |
No external refs found! |