Smo444121 (PACid_15414390)


Aliases : PACid_15414390

Description : 27.3.67 RNA.regulation of transcription.putative transcription regulator PHD finger family protein FUNCTIONS IN: zinc ion binding EXPRESSED IN: 23 plant structures EXPRESSED DURING: 13 growth stages CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787) BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT3G52100.1) Has 2616 Blast hits to 2466 proteins in 178 species: Archae - 0 Bacteria - 13 Metazoa - 2009 Fungi - 82 Plants - 239 Viruses - 0 Other Eukaryotes - 273 (source: NCBI BLink). & (loc_os12g34330.1 : 330.0


Gene families : OG_01_0001856 (Gene family) Phylogenetic Tree(s): OG0001856_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo444121
Cluster HCCA cluster: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
LOC_Os12g34330 Os12g0527800 27.3.67 RNA.regulation of transcription.putative... 0.02 Gene family
Solyc01g087430.3.1 Solyc01g087430.3 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
Zm00001d023914 GRMZM2G365888 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
Zm00001d041708 GRMZM2G081350 27.3.67 RNA.regulation of transcription.putative... 0.02 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 317 372
No external refs found!