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  5. Tin_g44303

Tin_g44303 (NFD4, HMGB4, NFD04)


Aliases : NFD4, HMGB4, NFD04

Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g44303

Target Alias Description ECC score Gene Family Method Actions
Aev_g39525 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Aop_g03365 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene13239.t1 HMGB6, Aspi01Gene13239 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene22135.t1 NFD03, HMGB3,... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Cba_g10021 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Cba_g11082 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Ceric.05G057900.1 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Cre11.g480950 ATHMG, HMG, SSRP1, NFD No description available 0.01 OrthoFinder output from all 47 species
Dac_g13332 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
LOC_Os04g47690.1 NFD03, HMGB3,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g16155 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Msp_g42589 NFD4, HMGB4, NFD04 DNA bending architectural protein *(HMG-B) & original... 0.07 OrthoFinder output from all 47 species
Nbi_g05652 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g29699 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.19 OrthoFinder output from all 47 species
Pir_g01738 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61736 No alias DNA bending architectural protein *(HMG-B) & original... 0.17 OrthoFinder output from all 47 species
Spa_g11610 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.16 OrthoFinder output from all 47 species
Spa_g47228 NFD4, HMGB4, NFD04 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0042393 histone binding IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 121 190
No external refs found!