Tin_g44072


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g44072

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00010p00262470 OTP85 Pentatricopeptide repeat-containing protein At2g02980,... 0.02 OrthoFinder output from all 47 species
AMTR_s00012p00252800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.02 OrthoFinder output from all 47 species
AMTR_s00025p00155620 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00235510 OTP84,... Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
AMTR_s00077p00166950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14730... 0.03 OrthoFinder output from all 47 species
AT2G13600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G25970 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g010668 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036756 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113425 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21644 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06813 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13258 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03230 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04222 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04425 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04459 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05105 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06051 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06159 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06199 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07370 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18512 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18615 DOT4 component *(MED19) of head module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Als_g18979 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19114 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26626 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30819 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g40180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g55234 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g57160 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g58582 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08872 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09005 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g23399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26985 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27890 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28230 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28594 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37584 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37588 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g41404 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g42783 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03164 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04207 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16821 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g18085 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23677 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68074 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68098 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25992.t1 Aspi01Gene25992 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene46643.t1 Aspi01Gene46643 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013978 CRR22 not classified & original description: CDS=1-2136 0.02 OrthoFinder output from all 47 species
Azfi_s0201.g057596 No alias not classified & original description: CDS=1-1803 0.03 OrthoFinder output from all 47 species
Cba_g05299 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05522 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06947 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07325 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45877 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G031800.1 Ceric.03G031800 not classified & original description: pacid=50573080... 0.03 OrthoFinder output from all 47 species
Ceric.10G028900.1 Ceric.10G028900 not classified & original description: pacid=50613320... 0.03 OrthoFinder output from all 47 species
Ceric.13G010900.1 Ceric.13G010900 not classified & original description: pacid=50636623... 0.03 OrthoFinder output from all 47 species
Ceric.13G031800.1 Ceric.13G031800 not classified & original description: pacid=50636627... 0.03 OrthoFinder output from all 47 species
Ceric.16G024400.1 Ceric.16G024400 not classified & original description: pacid=50589838... 0.05 OrthoFinder output from all 47 species
Ceric.23G042100.1 Ceric.23G042100 not classified & original description: pacid=50611070... 0.04 OrthoFinder output from all 47 species
Ceric.24G019600.1 Ceric.24G019600 not classified & original description: pacid=50629269... 0.03 OrthoFinder output from all 47 species
Ceric.32G026500.1 CRR2, Ceric.32G026500 not classified & original description: pacid=50597944... 0.03 OrthoFinder output from all 47 species
Ceric.35G030500.1 Ceric.35G030500 not classified & original description: pacid=50580789... 0.03 OrthoFinder output from all 47 species
Ceric.39G028600.1 Ceric.39G028600 not classified & original description: pacid=50582938... 0.03 OrthoFinder output from all 47 species
Dac_g09065 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35460 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35674 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g43234 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05682 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06971 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14779 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17095 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g22670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g24237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g25892 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38658 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38677 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39805 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g41902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45918 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23999 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25598 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28151 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g31683 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12053 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12147 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12271 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20812 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003453001 OTP80 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01008015001 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.03 OrthoFinder output from all 47 species
GSVIVT01008757001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
GSVIVT01015233001 EMB2261 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
GSVIVT01018262001 No alias Pentatricopeptide repeat-containing protein At2g44880... 0.02 OrthoFinder output from all 47 species
GSVIVT01022230001 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
GSVIVT01023644001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 OrthoFinder output from all 47 species
GSVIVT01028697001 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.02 OrthoFinder output from all 47 species
GSVIVT01031733001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
GSVIVT01036788001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_02573 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Gb_19040 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os06g12510.1 LOC_Os06g12510 Pentatricopeptide repeat-containing protein At5g15300... 0.02 OrthoFinder output from all 47 species
LOC_Os06g20870.1 LOC_Os06g20870 Pentatricopeptide repeat-containing protein At3g09040,... 0.02 OrthoFinder output from all 47 species
LOC_Os09g07780.1 OTP84, LOC_Os09g07780 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
Len_g18506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18960 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06446 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32792 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_53781g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_863836g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Msp_g28800 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20268 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g27740 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g32191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38399 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g40748 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g33905 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63028 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04611 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06281 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11096 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13846 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004386 No alias not classified & original description: CDS=1-2367 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018668 No alias ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g08130 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g21433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27497 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29713 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30171 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40724 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g091610.1.1 Solyc01g091610 Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
Solyc01g110010.3.1 Solyc01g110010 Pentatricopeptide repeat-containing protein At1g74600,... 0.03 OrthoFinder output from all 47 species
Solyc02g005280.1.1 Solyc02g005280 Pentatricopeptide repeat-containing protein At1g50270... 0.03 OrthoFinder output from all 47 species
Solyc02g065410.3.1 CRR22, Solyc02g065410 Pentatricopeptide repeat-containing protein At1g20230... 0.02 OrthoFinder output from all 47 species
Solyc02g082160.2.1 CRR22, Solyc02g082160 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Solyc03g007840.1.1 Solyc03g007840 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc03g063690.1.1 MEF1, Solyc03g063690 RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
Solyc03g098420.3.1 Solyc03g098420 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc03g116000.1.1 Solyc03g116000 Pentatricopeptide repeat-containing protein At3g47530... 0.03 OrthoFinder output from all 47 species
Solyc04g009000.1.1 Solyc04g009000 RNA editing factor (SLO2) 0.03 OrthoFinder output from all 47 species
Solyc06g053850.4.1 Solyc06g053850 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Solyc06g084580.1.1 Solyc06g084580 Pentatricopeptide repeat-containing protein At4g20770... 0.03 OrthoFinder output from all 47 species
Solyc07g006990.3.1 Solyc07g006990 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Solyc07g009220.2.1 Solyc07g009220 Pentatricopeptide repeat-containing protein At2g34400... 0.02 OrthoFinder output from all 47 species
Solyc09g007430.1.1 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Solyc09g010070.1.1 EMB2758, Solyc09g010070 Pentatricopeptide repeat-containing protein At4g33990... 0.02 OrthoFinder output from all 47 species
Solyc11g008970.1.1 Solyc11g008970 Pentatricopeptide repeat-containing protein At4g39952,... 0.03 OrthoFinder output from all 47 species
Spa_g06411 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16587 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17487 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g19938 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g33733 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47727 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50367 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53358 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55591 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06419 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e007600_P001 Zm00001e007600 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Zm00001e015695_P001 Zm00001e015695 Pentatricopeptide repeat-containing protein At4g16835,... 0.02 OrthoFinder output from all 47 species
Zm00001e018565_P001 Zm00001e018565 Pentatricopeptide repeat-containing protein At3g13880... 0.02 OrthoFinder output from all 47 species
Zm00001e032581_P001 Zm00001e032581 RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 161 207
IPR002885 Pentatricopeptide_repeat 338 360
IPR002885 Pentatricopeptide_repeat 401 428
IPR002885 Pentatricopeptide_repeat 265 294
IPR002885 Pentatricopeptide_repeat 367 396
IPR002885 Pentatricopeptide_repeat 237 262
No external refs found!