Tin_g43909


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g43909

Target Alias Description ECC score Gene Family Method Actions
AT3G47840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g014778 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g017307 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g098989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g29185 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g43288 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20391 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g30166 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene03412.t2 Aspi01Gene03412 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0005.g009227 No alias not classified & original description: CDS=1-1950 0.04 OrthoFinder output from all 47 species
Azfi_s0896.g091565 No alias not classified & original description: CDS=1-2586 0.04 OrthoFinder output from all 47 species
Cba_g06233 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g16658 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29934 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g45827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g68679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.35G015500.1 Ceric.35G015500 not classified & original description: pacid=50580909... 0.05 OrthoFinder output from all 47 species
Dac_g04720 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g08525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15529 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26159 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g38119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008922001 No alias Pentatricopeptide repeat-containing protein At4g08210... 0.03 OrthoFinder output from all 47 species
Len_g03388 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14105 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56481 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g03418 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06276 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07366 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11093 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g13259 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g35930 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g04332 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g33650 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04976 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17487 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g18027 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20492 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g22160 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23582 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g23872 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g29119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g30346 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g39284 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27204 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g33886 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g01657 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g35144 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g37149 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02982 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g09254 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17797 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001920 OTP86 not classified & original description: CDS=1-2427 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007436 No alias not classified & original description: CDS=1-1323 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007672 No alias not classified & original description: CDS=1-2547 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g012960 No alias not classified & original description: CDS=516-2783 0.03 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g11463 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 549 581
IPR002885 Pentatricopeptide_repeat 380 426
IPR002885 Pentatricopeptide_repeat 483 529
IPR002885 Pentatricopeptide_repeat 176 222
IPR002885 Pentatricopeptide_repeat 277 324
IPR002885 Pentatricopeptide_repeat 353 375
IPR002885 Pentatricopeptide_repeat 456 478
IPR002885 Pentatricopeptide_repeat 150 173
IPR002885 Pentatricopeptide_repeat 252 275
No external refs found!