Smo443606 (PACid_15415215)


Aliases : PACid_15415215

Description : 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING RING/U-box superfamily protein FUNCTIONS IN: zinc ion binding EXPRESSED IN: 24 plant structures EXPRESSED DURING: 15 growth stages CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957) BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G55530.1) Has 9425 Blast hits to 9403 proteins in 278 species: Archae - 0 Bacteria - 0 Metazoa - 2591 Fungi - 765 Plants - 4746 Viruses - 72 Other Eukaryotes - 1251 (source: NCBI BLink). & (loc_os04g43220.3 : 101.0


Gene families : OG_01_0000002 (Gene family) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo443606
Cluster HCCA cluster: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AT2G34000 No alias RING/U-box superfamily protein 0.03 Gene family
Cpa|evm.model.tig00000093.104 No alias No description available 0.01 Gene family
Cpa|evm.model.tig00000821.27 No alias No description available 0.01 Gene family
LOC_Os02g08200 Os02g0178600 No description available 0.02 Gene family
LOC_Os06g34560 Os06g0536466,... No description available 0.02 Gene family
Solyc01g088440.2.1 Solyc01g088440.2 No description available 0.04 Gene family
Zm00001d009894 No alias No description available 0.02 Gene family
Zm00001d052342 GRMZM2G033086 No description available 0.02 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001841 Znf_RING 351 392
No external refs found!