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  5. Tin_g42860

Tin_g42860


Description : component *(uL22) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001495 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001495_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g42860

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00224030 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
AT1G27400 No alias Ribosomal protein L22p/L17e family protein 0.02 OrthoFinder output from all 47 species
Ala_g34478 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cre13.g568900 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01008528001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01010450001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
LOC_Os09g08430.1 LOC_Os09g08430 component RPL17 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Mp1g10230.1 No alias component RPL17 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Pir_g05366 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c11_5840V3.1 Pp3c11_5840 Ribosomal protein L22p/L17e family protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR001063 Ribosomal_L22 1 100
No external refs found!