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  5. Smo442850

Smo442850 (PACid_15413997)


Aliases : PACid_15413997

Description : 35.1 not assigned.no ontology Transducin/WD40 repeat-like superfamily protein CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781) BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23430.1) Has 114222 Blast hits to 41452 proteins in 998 species: Archae - 86 Bacteria - 11863 Metazoa - 46637 Fungi - 24709 Plants - 15354 Viruses - 6 Other Eukaryotes - 15567 (source: NCBI BLink). & (loc_os01g57210.1 : 557.0


Gene families : OG_01_0001121 (Gene family) Phylogenetic Tree(s): OG0001121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo442850
Cluster HCCA cluster: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AT5G08390 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Gene family
AT5G23430 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Gene family
GSVIVT01034331001 No alias 35.1 not assigned.no ontology Transducin/WD40... 0.04 Gene family
LOC_Os01g57210 Os01g0780400 35.1 not assigned.no ontology Transducin/WD40... 0.03 Gene family
LOC_Os04g58130 Os04g0677650,... 35.1 not assigned.no ontology Transducin/WD40... 0.05 Gene family
Solyc02g021360.3.1 Solyc02g021360.3 35.1 not assigned.no ontology Transducin/WD40... 0.05 Gene family
Solyc02g078800.3.1 Solyc02g078800.3 35.1 not assigned.no ontology Transducin/WD40... 0.02 Gene family
Solyc02g078805.1.1 Solyc02g078805.1 31.1 cell.organisation Transducin/WD40 repeat-like... 0.03 Gene family
Zm00001d032598 GRMZM5G842970,... 35.1 not assigned.no ontology Transducin/WD40... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 138 174
No external refs found!