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  5. Tin_g41672

Tin_g41672


Description : pre-mRNA splicing factor *(SF1) & original description: none


Gene families : OG0000568 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000568_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g41672

Target Alias Description ECC score Gene Family Method Actions
Als_g15565 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05359 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08059 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g28636 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08280 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g31502 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g47007 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g55171 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59343 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
InterPro domains Description Start Stop
IPR032570 SF1-HH 8 75
IPR000504 RRM_dom 272 337
No external refs found!