Smo442211 (PACid_15409199)

Aliases : PACid_15409199

Description : 29.1.3 protein.aa activation.threonine-tRNA ligase Encodes a dual localized threonyl-tRNA synthetase found both in the mitochondrion and the chloroplast. Plants mutated in this gene terminate as embryos in the globular stage. EMBRYO DEFECTIVE 2761 (EMB2761) FUNCTIONS IN: ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, aminoacyl-tRNA ligase activity, threonine-tRNA ligase activity, ATP binding INVOLVED IN: threonyl-tRNA aminoacylation, embryo development ending in seed dormancy LOCATED IN: mitochondrion, chloroplast stroma, chloroplast CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Threonyl-tRNA synthetase, class IIa (InterPro:IPR002320), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), Anticodon-binding (InterPro:IPR004154), Threonyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR018158) BEST Arabidopsis thaliana protein match is: Threonyl-tRNA synthetase (TAIR:AT5G26830.1) Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12 Bacteria - 1396 Metazoa - 17338 Fungi - 3422 Plants - 5037 Viruses - 0 Other Eukaryotes - 2996 (source: NCBI BLink). & (chl4|509650 : 679.0

Gene families : OG_01_0005950 (Gene family) Phylogenetic Tree(s): OG0005950_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): Smo442211
Cluster HCCA cluster: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre10.g421600 No alias 29.1.3 protein.aa activation.threonine-tRNA ligase... 0.01 Gene family
LOC_Os02g33500 Os02g0538000 29.1.3 protein.aa activation.threonine-tRNA ligase... 0.02 Gene family
Solyc07g048080.3.1 Solyc07g048080.3 29.1.3 protein.aa activation.threonine-tRNA ligase... 0.03 Gene family

Type GO Term Name Evidence Source
BP GO:0006418 tRNA aminoacylation for protein translation IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002314 aa-tRNA-synt_IIb 342 515
No external refs found!