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  5. Tin_g40380

Tin_g40380


Description : not classified & original description: none


Gene families : OG0005612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g40380

Target Alias Description ECC score Gene Family Method Actions
AT4G34910 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Ceric.24G071500.1 Ceric.24G071500 not classified & original description: pacid=50629253... 0.03 OrthoFinder output from all 47 species
Cre12.g526850 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dac_g43527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_38528 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os03g51900.1 LOC_Os03g51900 DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Lfl_g07340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430669g0020 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_34193g0020 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_71366g0010 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp7g04610.1 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Ore_g07475 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo440996 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc02g070100.3.1 Solyc02g070100 DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e012111_P001 Zm00001e012111 DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 257 408
IPR001650 Helicase_C 467 490
IPR011545 DEAD/DEAH_box_helicase_dom 41 217
No external refs found!