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  5. Tin_g38987

Tin_g38987 (ATMSH2, MSH2)


Aliases : ATMSH2, MSH2

Description : component *(MSH2) of MSH2-x mismatch repair heterodimers & original description: none


Gene families : OG0004193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004193_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g38987

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001224.8 ATMSH2, MSH2 DNA damage response.DNA repair mechanisms.mismatch... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009690 cytokinin metabolic process IEP HCCA
BP GO:0010817 regulation of hormone levels IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019139 cytokinin dehydrogenase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
BP GO:0042445 hormone metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
InterPro domains Description Start Stop
IPR000432 DNA_mismatch_repair_MutS_C 671 872
IPR007695 DNA_mismatch_repair_MutS-lik_N 34 139
IPR007696 DNA_mismatch_repair_MutS_core 311 615
IPR007860 DNA_mmatch_repair_MutS_con_dom 155 293
IPR007861 DNA_mismatch_repair_MutS_clamp 479 574
No external refs found!